Learning Forum

[ziqii.liu]

Hi everyone,

I am attempting to run Ansys HFSS on the Scinet supercomputer, which comprises 4 nodes, each equipped with 40 cores available for running Slurm jobs. My goal is to simulate a large domain, leveraging HFSS's domain decomposition feature, which allows simultaneous solving of different domains on separate nodes. I intend to split the simulation into 4 tasks and distribute them across the nodes. While I am familiar with distributing tasks on a single node, I am unsure about the process for distributing tasks across multiple nodes.

Below is the code I am currently using. To submit the Slurm job, I use the command "sbatch sample.sh". Could someone kindly assist me with this? I am uncertain where I might have made a mistake.

It gives me error:

[randyk]

Hi Ziqi,

What is the OS version:   cat /etc/*release
What is the SLURM version:  sinfo -V

Note that AnsysEM2021R2 was the first release to officially support SLURM. There were a few bugs/workarounds needed.  I would consider migrating to a current version AEDT.

Here are my notes regarding AEDT2021R2 on SLURM

If you get a case with AEDT2021R2 and SLURM 20.x - run through this first.

 

Important,  customer must be running AEDT 2021R2 and SLURM 20.x for the following steps

-- You would want to gather the following to confirm scheduler version and network info

$ cat /etc/*release

$ sinfo -V

$ ifconfig

 

 

Enabling tight integration change - this requires editing slurm_srun_wrapper.sh and setting batchoption 'RemoteSpawncommand'

 

1.. (TFS447753)  edit the slurm_srun_wrapper.sh  

archive/copy .../AnsysEM21.2/Linux64/schedulers/scripts/utils/slurm_srun_wrapper.sh to slurm_srun_wrapper.sh.ORIG

 

edit .../AnsysEM21.2/Linux64/schedulers/scripts/utils/slurm_srun_wrapper.sh and insert the following at line 28: host=$(echo "${host}" | cut -d'.' -f1)

ex:

if [[ -n "$ANSYSEM_SLURM_JOB_ID" ]]

then

 export SLURM_JOB_ID="${ANSYSEM_SLURM_JOB_ID}"

 echo "set SLURM_JOB_ID=${SLURM_JOB_ID}" >> "$DEBUG_FILE"

fi

=> # tfs447753

=> host=$(echo "${host}" | cut -d'.' -f1)

verStr=scontrol --version

 

 

2.. (TFS554680)  If SLURM version 20.0-20.10 - Generic SLURM scheduler integration does not check for SLURM minor version

     srun '--overlap' option was introduced in SLURM VERSION 20.11

     slurm_srun_wrapper.sh only checks if the version is >= 20 and attempts to apply the srun '--overlap' option

edit .../AnsysEM21.2/Linux64/schedulers/scripts/utils/slurm_srun_wrapper.sh and comment out the appropriate srun and if/else/fi lines at bottom of file

 

# if [ "${ver[0]}" -ge 20 ];then # SLURM ver >= 20.**.**

#     echo "srun --overcommit --overlap --export=ALL -n 1 -N 1 --cpu-bind=none --mem-per-cpu=0 -w ${host} $@" >> "$DEBUG_FILE"

#     srun --overcommit --overlap --export=ALL -n 1 -N 1 --cpu-bind=none --mem-per-cpu=0 -w $host "$@"

# else

    echo "srun --overcommit --export=ALL -n 1 -N 1 --cpu-bind=none --mem-per-cpu=0 -w ${host} $@" >> "$DEBUG_FILE"

    srun --overcommit --export=ALL -n 1 -N 1 --cpu-bind=none --mem-per-cpu=0 -w $host "$@"

# fi

 

This should enable customer to run manual jobs for adaptive meshing, and then auto jobs for frequency sweeps. 

 

 

 

3.. After making the slurm_srun_wrapper.sh file change, run the following to set defaults to tight integration   (will create/modify  //AnsysEM21.2/Linux64/config/default.XML)

 

as root or installation owner

cd /opt/AnsysEM/AnsysEM21.2/Linux64

./UpdateRegistry -set -ProductName ElectronicsDesktop2021.2 -RegistryKey "Desktop/Settings/ProjectOptions/ProductImprovementOptStatus" -RegistryValue 0 -RegistryLevel install

./UpdateRegistry -set -ProductName ElectronicsDesktop2021.2 -RegistryKey "HFSS/MPIVendor" -RegistryValue "Intel" -RegistryLevel install

./UpdateRegistry -set -ProductName ElectronicsDesktop2021.2 -RegistryKey "HFSS 3D Layout Design/MPIVendor" -RegistryValue "Intel" -RegistryLevel install

./UpdateRegistry -set -ProductName ElectronicsDesktop2021.2 -RegistryKey "Maxwell 2D/MPIVendor" -RegistryValue "Intel" -RegistryLevel install

./UpdateRegistry -set -ProductName ElectronicsDesktop2021.2 -RegistryKey "Maxwell 3D/MPIVendor" -RegistryValue "Intel" -RegistryLevel install

./UpdateRegistry -set -ProductName ElectronicsDesktop2021.2 -RegistryKey "Q3D Extractor/MPIVendor" -RegistryValue "Intel" -RegistryLevel install

./UpdateRegistry -set -ProductName ElectronicsDesktop2021.2 -RegistryKey "Icepak/MPIVendor" -RegistryValue "Intel" -RegistryLevel install

./UpdateRegistry -set -ProductName ElectronicsDesktop2021.2 -RegistryKey "HFSS/RemoteSpawnCommand" -RegistryValue "scheduler" -RegistryLevel install

./UpdateRegistry -set -ProductName ElectronicsDesktop2021.2 -RegistryKey "HFSS 3D Layout Design/RemoteSpawnCommand" -RegistryValue "scheduler" -RegistryLevel install

./UpdateRegistry -set -ProductName ElectronicsDesktop2021.2 -RegistryKey "Maxwell 3D/RemoteSpawnCommand" -RegistryValue "scheduler" -RegistryLevel install

./UpdateRegistry -set -ProductName ElectronicsDesktop2021.2 -RegistryKey "Maxwell 2D/RemoteSpawnCommand" -RegistryValue "scheduler" -RegistryLevel install

./UpdateRegistry -set -ProductName ElectronicsDesktop2021.2 -RegistryKey "Q3D Extractor/RemoteSpawnCommand" -RegistryValue "scheduler" -RegistryLevel install

./UpdateRegistry -set -ProductName ElectronicsDesktop2021.2 -RegistryKey "Icepak/RemoteSpawnCommand" -RegistryValue "scheduler" -RegistryLevel install

./UpdateRegistry -set -ProductName ElectronicsDesktop2021.2 -RegistryKey "Desktop/Settings/ProjectOptions/ProductImprovementOptStatus" -RegistryValue 0 -RegistryLevel install

# ./UpdateRegistry -set -ProductName ElectronicsDesktop2021.2 -RegistryKey "Desktop/Settings/ProjectOptions/AnsysEMPreferredSubnetAddress" -RegistryValue "192.168.1.0/24" -RegistryLevel install

 

 

 

4.. An example batch script:

 

Create %HOME/anstest/job.sh with the following contents (correct highlighted):

 

#!/bin/bash

#SBATCH -N 3        # allocate 3 nodes

#SBATCH -n 12       # 12 tasks total

##SBATCH --exclusive    # no other jobs on the nodes while job is running

#SBATCH -J AnsysEMTest   # sensible name for the job

 

#Set job folder, scratch folder, project, and design (Design is optional)

JobFolder=$(pwd)

ProjName=OptimTee-DiscreteSweep-FineMesh.aedt

DsnName="TeeModel:Nominal"

 

# Executable path and SLURM custom integration variables

AppFolder=/opt/AnsysEM/AnsysEM21.2/Linux64

 

# setup environment and srun

export ANSYSEM_GENERIC_MPI_WRAPPER=${AppFolder}/schedulers/scripts/utils/slurm_srun_wrapper.sh

export ANSYSEM_COMMON_PREFIX=${AppFolder}/common

export ANSYSEM_TASKS_PER_NODE=${SLURM_TASKS_PER_NODE}  

 

# setup srun

srun_cmd="srun --overcommit --export=ALL -n 1 --cpu-bind=none --mem-per-cpu=0 --overlap "

# note: srun '--overlap' option was introduced in SLURM VERSION 20.11"

 

 

# MPI timeout set to 30min default for cloud suggest lower to 120 or 240 seconds for onprem

export MPI_TIMEOUT_SECONDS=120

 

# System networking environment variables - HPC system dependent should not be user edits!

# export ANSOFT_MPI_INTERCONNECT=ib

# export ANSOFT_MPI_INTERCONNECT_VARIANT=ofed

 

# Skip dependency check

# export ANS_NODEPCHECK=1

 

# Autocompute total cores from node allocation

CoreCount=$((SLURM_JOB_NUM_NODES * SLURM_CPUS_ON_NODE))

 

# Run Job

${srun_cmd} ${AppFolder}/ansysedt -ng -monitor -waitforlicense -useelectronicsppe=1 -distributed -auto -machinelist numcores=$CoreCount -batchoptions "" -batchsolve ${DsnName} ${JobFolder}/${ProjName}

 

 

 

Then run it:

$ dos2unix $HOME/anstest/job.sh

$ chmod +x  $HOME/anstest/job.sh

$ sbatch $HOME/anstest/job.sh

 

When complete, send resulting:

$HOME/anstest/OptimTee-DiscreteSweep-FineMesh.aedt.batchinfo/*.log

 

 

5. If customer using Windows to Linux submission

Ansoftrsmservice cannot run as root.

-- make sure to set ANSYSEM_GENERIC_EXEC_PATH before starting ansoftrsmservice

--  In ansoftrsmservice.cfg, the content should be:

$begin 'Scheduler'

   'SchedulerName'='generic'

   'ConfigString'='{"Proxy":"slurm", "Data":""}'

$end 'Scheduler'

 

[randyk]

Hi Ziqi,

As indicated many SLURM integration issues were resolved by the 2022R2 release.
If you are able to migrate to AnsysEM2022R2 or newer, the following guidance should help.

If you get a case with AEDT2022R2 and SLURM 20.x - run through this first.

 

Important,  customer must be running AEDT 2021R2 and SLURM 20.x for the following steps

-- You would want to gather the following to confirm scheduler version and network info

$ cat /etc/*release

$ sinfo -V

$ ifconfig

 

 

Enabling tight integration change - this requires setting batchoption 'RemoteSpawncommand'

 

1.. run the following to set defaults to tight integration   (will create/modify  //v222/Linux64/config/default.XML)

 

as root or installation owner

cd //v222/Linux64

./UpdateRegistry -set -ProductName ElectronicsDesktop2022.2 -RegistryKey "Desktop/Settings/ProjectOptions/ProductImprovementOptStatus" -RegistryValue 0 -RegistryLevel install

./UpdateRegistry -set -ProductName ElectronicsDesktop2022.2 -RegistryKey "HFSS/MPIVendor" -RegistryValue "Intel" -RegistryLevel install

./UpdateRegistry -set -ProductName ElectronicsDesktop2022.2 -RegistryKey "HFSS 3D Layout Design/MPIVendor" -RegistryValue "Intel" -RegistryLevel install

./UpdateRegistry -set -ProductName ElectronicsDesktop2022.2 -RegistryKey "Maxwell 2D/MPIVendor" -RegistryValue "Intel" -RegistryLevel install

./UpdateRegistry -set -ProductName ElectronicsDesktop2022.2 -RegistryKey "Maxwell 3D/MPIVendor" -RegistryValue "Intel" -RegistryLevel install

./UpdateRegistry -set -ProductName ElectronicsDesktop2022.2 -RegistryKey "Q3D Extractor/MPIVendor" -RegistryValue "Intel" -RegistryLevel install

./UpdateRegistry -set -ProductName ElectronicsDesktop2022.2 -RegistryKey "Icepak/MPIVendor" -RegistryValue "Intel" -RegistryLevel install

./UpdateRegistry -set -ProductName ElectronicsDesktop2022.2 -RegistryKey "HFSS/RemoteSpawnCommand" -RegistryValue "scheduler" -RegistryLevel install

./UpdateRegistry -set -ProductName ElectronicsDesktop2022.2 -RegistryKey "HFSS 3D Layout Design/RemoteSpawnCommand" -RegistryValue "scheduler" -RegistryLevel install

./UpdateRegistry -set -ProductName ElectronicsDesktop2022.2 -RegistryKey "Maxwell 3D/RemoteSpawnCommand" -RegistryValue "scheduler" -RegistryLevel install

./UpdateRegistry -set -ProductName ElectronicsDesktop2022.2 -RegistryKey "Maxwell 2D/RemoteSpawnCommand" -RegistryValue "scheduler" -RegistryLevel install

./UpdateRegistry -set -ProductName ElectronicsDesktop2022.2 -RegistryKey "Q3D Extractor/RemoteSpawnCommand" -RegistryValue "scheduler" -RegistryLevel install

./UpdateRegistry -set -ProductName ElectronicsDesktop2022.2 -RegistryKey "Icepak/RemoteSpawnCommand" -RegistryValue "scheduler" -RegistryLevel install

./UpdateRegistry -set -ProductName ElectronicsDesktop2022.2 -RegistryKey "Desktop/Settings/ProjectOptions/ProductImprovementOptStatus" -RegistryValue 0 -RegistryLevel install

# ./UpdateRegistry -set -ProductName ElectronicsDesktop2022.2 -RegistryKey "Desktop/Settings/ProjectOptions/AnsysEMPreferredSubnetAddress" -RegistryValue "192.168.1.0/24" -RegistryLevel install

 

 

 

2.. An example batch script:

 

Create %HOME/anstest/job.sh with the following contents (correct highlighted):

 

#!/bin/bash

#SBATCH -N 3        # allocate 3 nodes

#SBATCH -n 12       # 12 tasks total

##SBATCH --exclusive    # no other jobs on the nodes while job is running

#SBATCH -J AnsysEMTest   # sensible name for the job

 

#Set job folder, scratch folder, project, and design (Design is optional)

JobFolder=$(pwd)

ProjName=OptimTee-DiscreteSweep-FineMesh.aedt

DsnName="TeeModel:Nominal"

 

# Executable path and SLURM custom integration variables

AppFolder=//AnsysEM/v222/Linux64

 

# setup environment and srun

export ANSYSEM_GENERIC_MPI_WRAPPER=${AppFolder}/schedulers/scripts/utils/slurm_srun_wrapper.sh

export ANSYSEM_COMMON_PREFIX=${AppFolder}/common

export ANSYSEM_TASKS_PER_NODE=${SLURM_TASKS_PER_NODE}  

 

# setup srun

srun_cmd="srun --overcommit --export=ALL -n 1 --cpu-bind=none --mem-per-cpu=0 --overlap "

# note: srun '--overlap' option was introduced in SLURM VERSION 20.11"

 

 

# MPI timeout set to 30min default for cloud suggest lower to 120 or 240 seconds for onprem

export MPI_TIMEOUT_SECONDS=120

 

# System networking environment variables - HPC system dependent should not be user edits!

# export ANSOFT_MPI_INTERCONNECT=ib

# export ANSOFT_MPI_INTERCONNECT_VARIANT=ofed

 

# Skip dependency check

# export ANS_NODEPCHECK=1

 

# Autocompute total cores from node allocation

CoreCount=$((SLURM_JOB_NUM_NODES * SLURM_CPUS_ON_NODE))

 

# Copy Example to $JobFolder

 cp ${AppFolder}/schedulers/diagnostics/Projects/HFSS/${ProjName} ${JobFolder}/${ProjName}

 

# Run Job

${srun_cmd} ${AppFolder}/ansysedt -ng -monitor -waitforlicense -useelectronicsppe=1 -distributed -auto -machinelist numcores=$CoreCount -batchoptions "" -batchsolve ${DsnName} ${JobFolder}/${ProjName}

 

 

 

Then run it:

$ dos2unix $HOME/anstest/job.sh

$ chmod +x  $HOME/anstest/job.sh

$ sbatch $HOME/anstest/job.sh

 

When complete, send resulting:

$HOME/anstest/OptimTee-DiscreteSweep-FineMesh.aedt.batchinfo/*.log

 

 

 

===============================================

=If customer using Windows to Linux submission=

===============================================

 

1.. Ansoftrsmservice cannot run as root.

-- make sure to set ANSYSEM_GENERIC_EXEC_PATH before starting ansoftrsmservice

edit:  /path/rsm/Linux64/ansoftrsmservice and add line 2:

export ANSYSEM_GENERIC_EXEC_PATH=//v222/Linux64/common/mono/Linux64/bin://v222/Linux64/common/IronPython

 

2.. Patch slurm_srun_wrapper.sh

File: //AnsysEM/rsm/Linux64/schedulers/scripts/utils/slurm_srun_wrapper.sh

 

Replace line 20

slurm_host=$(${mono} ${ipy} ${script} --replacehost ${host})

 

with:

slurm_host=$(echo "${host}" | cut -d'.' -f1)

 

 

3..

--  In ansoftrsmservice.cfg, the content should be:

$begin 'Scheduler'

   'SchedulerName'='generic'

   'ConfigString'='{"Proxy":"slurm", "Data":""}'

$end 'Scheduler'