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Seems like your python method should work. It can be done in POST1 with APDL also:
/post1
set,last ! store some result
node_1=100 ! hypothetical node numbers
node_2=200
delta_x=ux(node_1)-ux(node_2)
delta_y=uy(node_1)-uy(node_2)
delta_z=uz(node_1)-uz(node_2)
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