Hi like I mentioned, exclude all the commands that update or solve the project. You can add all the BCs and post-processing objects only (do not solve or evaluate anything in the DSscript)
i.e. after model1.SendCommand(Language='Python', Command = DSscriptcommand)
you may need something on the lines of:
resultsComponent1 = system1.GetComponent(Name="Results")
resultsComponent1.Update(AllDependencies=True)
and then you will continue with second system in similar fashion. So the first system will update first and then second will be updated later from workbench page.
-Aniket
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