{"id":381229,"date":"2024-08-30T19:07:45","date_gmt":"2024-08-30T19:07:45","guid":{"rendered":"https:\/\/innovationspace.ansys.com\/forum\/forums\/topic\/running-lumerical-fdtd-files-on-a-campus-cluster-using-sun-grid-engine-sge\/"},"modified":"2024-10-03T22:20:01","modified_gmt":"2024-10-03T22:20:01","slug":"running-lumerical-fdtd-files-on-a-campus-cluster-using-sun-grid-engine-sge","status":"closed","type":"topic","link":"https:\/\/innovationspace.ansys.com\/forum\/forums\/topic\/running-lumerical-fdtd-files-on-a-campus-cluster-using-sun-grid-engine-sge\/","title":{"rendered":"Running Lumerical FDTD files on a Campus cluster using Sun Grid Engine (SGE)"},"content":{"rendered":"<p>&lt;p&gt;I want to use the Campus cluster (Sun Grid Engine) to run FDTD files.&nbsp;&lt;br&gt;https:\/\/answers.uillinois.edu\/scs\/page.php?id=104365&lt;br&gt;&lt;br&gt;I followed the following instructions to install Lumerical (2024-R1.3) in my cluster folder.&lt;br&gt;https:\/\/optics.ansys.com\/hc\/en-us\/articles\/360035201613-Configuring-your-cluster-for-Ansys-Lumerical&lt;br&gt;&lt;br&gt;Next, based on another article (https:\/\/optics.ansys.com\/hc\/en-us\/articles\/360039028654-Job-scheduler-submission-scripts-SGE-Slurm-Torque), I created the following shell script as &#8220;fdtd_test.sh&#8221;.&nbsp;&lt;br&gt;&lt;br&gt;&#8212;&lt;\/p&gt;&lt;p&gt;#!\/bin\/csh&lt;br&gt;#$ -N fdtd_test&lt;br&gt;#$ -cwd&lt;br&gt;#$ -o run.out&lt;br&gt;#$ -e run.err&lt;br&gt;#$ -q intel24&lt;br&gt;#$ -pe orte 4&lt;\/p&gt;&lt;p&gt;&lt;br&gt;module load mpi\/openmpi-x86_64&lt;\/p&gt;&lt;p&gt;echo &#8220;Running on nodes:&#8221;&lt;br&gt;cat $PE_HOSTFILE&lt;\/p&gt;&lt;p&gt;\/home\/katsuya2\/tools\/lumerical\/v241\/bin\/fdtd-mpi-status.sh&lt;br&gt;\/home\/katsuya2\/tools\/lumerical\/v241\/bin\/fdtd-run-pbs.sh&lt;\/p&gt;&lt;p&gt;ls -l \/home\/katsuya2\/tools\/lumerical\/v241\/bin\/fdtd-engine-ompi-lcl&lt;br&gt;ls -l rod_ctab_1.fsp&lt;\/p&gt;&lt;p&gt;export PATH=\/home\/katsuya2\/tools\/lumerical\/v241\/bin:$PATH&lt;br&gt;export LD_LIBRARY_PATH=\/home\/katsuya2\/tools\/lumerical\/v241\/lib:$LD_LIBRARY_PATHulimit -c unlimited&lt;\/p&gt;&lt;p&gt;mpirun \/home\/katsuya2\/tools\/lumerical\/v241\/bin\/fdtd-engine-ompi-lcl -logall -fullinfo rod_ctab_1.fsp&lt;\/p&gt;&lt;p&gt;&#8212;&nbsp;&lt;br&gt;&lt;br&gt;However, it didn&#8217;t work and I got the error &lt;br&gt;saying &#8220;TERM environment variable not set.&lt;br&gt;\/home\/katsuya2\/tools\/lumerical\/v241\/bin\/fdtd-engine-ompi-lcl: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory&lt;br&gt;\/home\/katsuya2\/tools\/lumerical\/v241\/bin\/fdtd-engine-ompi-lcl: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory&lt;br&gt;&#8221;&lt;br&gt;This looks like I&#8217;m missing libmpi.so.40, but I&#8217;m not sure how I can install this.&nbsp;&lt;br&gt;Could you give me some advice to run this file on the cluster?&nbsp;&lt;\/p&gt;<\/p>\n","protected":false},"template":"","class_list":["post-381229","topic","type-topic","status-closed","hentry","topic-tag-cluster"],"aioseo_notices":[],"aioseo_head":"\n\t\t<!-- All in One SEO 4.9.10 - aioseo.com -->\n\t<meta name=\"description\" content=\"I want to use the Campus cluster (Sun Grid Engine) to run FDTD files. https:\/\/answers.uillinois.edu\/scs\/page.php?id=104365I followed the following instructions to install Lumerical (2024-R1.3) in my cluster folder.https:\/\/optics.ansys.com\/hc\/en-us\/articles\/360035201613-Configuring-your-cluster-for-Ansys-LumericalNext, based on another article (https:\/\/optics.ansys.com\/hc\/en-us\/articles\/360039028654-Job-scheduler-submission-scripts-SGE-Slurm-Torque), I created the following shell script as &quot;fdtd_test.sh&quot;. ---#!\/bin\/csh#$ -N fdtd_test#$ -cwd#$ -o run.out#$ -e run.err#$ -q intel24#$ -pe orte 4module load mpi\/openmpi-x86_64echo &quot;Running on\" \/>\n\t<meta name=\"robots\" content=\"max-image-preview:large\" \/>\n\t<link rel=\"canonical\" href=\"https:\/\/innovationspace.ansys.com\/forum\/forums\/topic\/running-lumerical-fdtd-files-on-a-campus-cluster-using-sun-grid-engine-sge\/\" \/>\n\t<meta name=\"generator\" content=\"All in One SEO (AIOSEO) 4.9.10\" \/>\n\t\t<meta property=\"og:locale\" content=\"en_US\" \/>\n\t\t<meta property=\"og:site_name\" content=\"Ansys Learning Forum | Ansys Innovation Space\" \/>\n\t\t<meta property=\"og:type\" content=\"article\" \/>\n\t\t<meta property=\"og:title\" content=\"Running Lumerical FDTD files on a Campus cluster using Sun Grid Engine (SGE) | Ansys Learning Forum\" \/>\n\t\t<meta property=\"og:description\" content=\"I want to use the Campus cluster (Sun Grid Engine) to run FDTD files. https:\/\/answers.uillinois.edu\/scs\/page.php?id=104365I followed the following instructions to install Lumerical (2024-R1.3) in my cluster folder.https:\/\/optics.ansys.com\/hc\/en-us\/articles\/360035201613-Configuring-your-cluster-for-Ansys-LumericalNext, based on another article (https:\/\/optics.ansys.com\/hc\/en-us\/articles\/360039028654-Job-scheduler-submission-scripts-SGE-Slurm-Torque), I created the following shell script as &quot;fdtd_test.sh&quot;. ---#!\/bin\/csh#$ -N fdtd_test#$ -cwd#$ -o run.out#$ -e run.err#$ -q intel24#$ -pe orte 4module load mpi\/openmpi-x86_64echo &quot;Running on\" \/>\n\t\t<meta property=\"og:url\" content=\"https:\/\/innovationspace.ansys.com\/forum\/forums\/topic\/running-lumerical-fdtd-files-on-a-campus-cluster-using-sun-grid-engine-sge\/\" \/>\n\t\t<meta property=\"article:published_time\" content=\"2024-08-30T19:07:45+00:00\" \/>\n\t\t<meta property=\"article:modified_time\" content=\"2024-10-03T22:20:01+00:00\" \/>\n\t\t<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n\t\t<meta name=\"twitter:title\" content=\"Running Lumerical FDTD files on a Campus cluster using 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